- GA Andrews, RM Kniseley HN Wagner Jr, ed: Radioactive Pharmaceuticals. USAEC Symposium Series 6, CONF-651111, National Bureau of Standards, Springfield, Virginia, 1966.
- Wagner HN Jr, ed.: Principles in Nuclear Medicine. Philadelphia: WB Saunders Company Publishers, 1968.
- DeLand FH, Wagner HN Jr: Atlas of Nuclear Medicine, Vol. I. The Brain. Philadelphia: WB Saunders Company, 1969.
- DeLand FH, Wagner HN Jr: Atlas of Nuclear Medicine, Vol. II. Lung and Heart. Philadelphia: WB Saunders Company, 1971.
- Wagner HN Jr: Xenon-133 in the Differential Diagnosis of Pulmonary Embolism. NEN Radiopharmaceutical Division, July 1972, Billerica, Massachusetts.
- DeLand FH, Wagner HN Jr: Atlas of Nuclear Medicine, Vol. III, RES Liver and Thyroid. Philadelphia: WB Saunders Company, 1972.
- James AE, Wagner HN Jr, Cooke RE, ed.: Pediatric Nuclear Medicine. Philadelphia: WB Saunders Company, 1974.
- Wiseman J, Wagner HN Jr: A Lung Scanning Catechism. St. Paul, Minnesota, 3M Company, 1974.
- Wagner HN Jr, ed.: Nuclear Medicine. New York, NY: Hospital Practice Publishing Co., 1975.
- Roy RB, Geyer JC, Laster HW, Holliday DR, Entwisle D, Fisher AC, Gomezplata A, Heinle DR, McLain JH, Milsten D, Munno FJ, Power G, Wagner HN Jr: Panel on Public Policy on Nuclear Energy for Electricity Generation. Final Report to the Governor of Maryland. Maryland: Inland Environmental Laboratory, Center for Environmental and Estuarine Studies, University of Maryland, June 1976.
- Strauss HW, Pitt B, Rouleau J, Bailey IK, Wagner HN Jr, ed.: North WA: Atlas of Cardiovascular Nuclear Medicine, Selected Case Studies. St. Louis: CV Mosby Co, 1977.
- Alderson PO, Gilday DL, Wagner HN: Atlas of Pediatric Nuclear Medicine. St. Louis, Missouri: CV Mosby Company, 1978.
- Horst W, Wagner HN Jr, Buchanan JW, ed. Frontiers in Nuclear Medicine. New York: Springer-Verlag, 1980.
- Wagner HN Jr, Katz R, Sachariah KG, Zerhouni EA: Radionuclide Scanning: A New Look At The Heart. Monograph. Merck Sharp & Dohme.
- Iio M, Wagner HN Jr, ed.: Geriatric Nuclear Medicine. Tokyo: Igaku-Shoin Ltd, 1983.
- Deutsch E, Nicolini M, Wagner HN, Segre E International Symposium on Technetium in Chemistry and Nuclear Medicine (Villa Simes Padova, Italy, 1982): Technetium in Chemistry and Nuclear Medicine. E Deutsch M Nicolini HN Wagner Jr, ed. G Bandoli, U Mazzi, associate ed., presentation by E Segre. Verona, Italy: Cortina International; New York: distributed by Raven Press, 1983.
- Wagner HN Jr: Nuclear medicine: Present and future. Summary of lectures presented in Japan, Autumn 1984. (Printed in Japanese). Nihon Medi-Physics, May, 1985. (Monograph)
- Wagner HN Jr, Buchanan JW, Espinola-Vassallo D: Diagnostic Nuclear Medicine: Patient Studies. Chicago: Year Book Medical Publishers, Inc., 1986.
- Wagner HN Jr, Ketchum LE: Living with Radiation: The Risk, The Promise. Baltimore, Maryland: Johns Hopkins University Press, 1988.
- Frost JJ, Wagner HN Jr, eds: Quantitative Imaging: Neuroreceptors, Neurotransmitters and Enzymes. New York: Raven Press. 1990.
- Wagner HN Jr. Szabo Z, Buchanan JW eds: Principles of Nuclear Medicine, Second Edition. W.B. Saunders, Philadelphia, 1995.